Maxime Hebrard

Contact Information

Laboratory for Integrated Bioinformatics
RIKEN Center for Integrative Medical Sciences
1-7-22 Suehiro-cho, Tsurumi-ku
Yokohama, Kanagawa 230-0045 Japan
Tel: +81 (0)45 503-9282 (ext.8054)
E-mail: maxime.hebrard@riken.jp

Bioinformatics Softwares

  • MetaTreeMap [1]
  • LIB Viz Gallery [2]
  • TASE: Transmitted Allele Search Engine [3]

RIKEN Publications

  • "Transcriptomic study of Salmonella enterica subspecies enterica serovar Typhi biofilm." Chin KCJ, Taylor TD, Hebrard M, Anbalagan K, Dashti MG, Phua KK. BMC Genomics 18(1):836-844. (October 31, 2017) PMID 29089020
  • "MetaTreeMap: an alternative visualization method for displaying metagenomic phylogenic trees [4]." Hebrard M, Taylor TD. PLOS One 11(6):e0158261. (June 23, 2016) PMID 27336370

Pre-RIKEN Publications

  • "Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia." Dwivedi A, Reynes C, Kuehn A, Roche DB, Khim N, Hebrard M, Milanesi S, Rivals E, Frutos R, Menard D, Ben Mamoun C, Colinge J, Cornillot C. Malaria Journal 16():493. (December 20, 2017) PMID
  • "Population genomics of picophytoplankton unveils novel chromosome hypervariability." Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G. Science Advances 3(7):e1700239. (July 5, 2017) PMID 28695208
  • "Recessive mutations in RTN4IP1 cause isolated and syndromic optic neuropathies." Angebault C, Guichet PO, Talmat-Amar Y, Charif M, Gerber S, Fares-Taie L, Gueguen N, Halloy F, Moore D, Amati-Bonneau P, Manes G, Hebrard M, Bocquet B, Quiles M, Piro-Mégy C, Teigell M, Delettre C, Rossel M, Meunier I, Preising M, Lorenz B, Carelli V, Chinnery PF, Yu-Wai-Man P, Kaplan J, Roubertie A, Barakat A, Bonneau D, Reynier P, Rozet JM, Bomont P, Hamel CP, Lenaers G. American Journal of Human Genetics 97(5):754-60. (November 5, 2015) PMID 26593267
  • "Mutation in NDUFA13/GRIM19 leads to early onset hypotonia, dyskinesia and sensorial deficiencies, and mitochondrial complex I instability." Angebault C, Charif M, Guegen N, Piro-Megy C, Mousson de Camaret B, Procaccio V, Guichet PO, Hebrard M, Manes G, Leboucq N, Rivier F, Hamel CP, Lenaers G, Roubertie A. Human Molecular Genetics 24(14):3948-55. (July 15, 2015) PMID 25901006
  • "Homozygosity mapping in autosomal recessive retinitis pigmentosa families detects novel mutations." Bocquet B, Marzouka NA, Hebrard M, Manes G, Sénéchal A, Meunier I, Hamel CP. Molecular Vision 19:2487-2500. (December 8, 2013) PMID 24339724
  • "Mutations in IMPG1 cause vitelliform macular dystrophies." Manes G, Meunier I, Avila-Fernández A, Banfi S, Le Meur G, Zanlonghi X, Corton M, Simonelli F, Brabet P, Labesse G, Audo I, Mohand-Said S, Zeitz C, Sahel JA, Weber M, Dollfus H, Dhaenens CM, Allorge D, De Baere E, Koenekoop RK, Kohl S, Cremers FP, Hollyfield JG, Sénéchal A, Hebrard M, Bocquet B, Ayuso García C, Hamel CP. American Journal of Human Genetics 93(3):571-578. (September 5, 2013) PMID 23993198
  • "Relative frequencies of inherited retinal dystrophies and optic neuropathies in Southern France: assessment of 21-year data management." Bocquet B, Lacroux A, Surget MO, Baudoin C, Marquette V, Manes G, Hebrard M, Sénéchal A, Delettre C, Roux AF, Claustres M, Dhaenens CM, Rozet JM, Perrault I, Bonnefont JP, Kaplan J, Dollfus H, Amati-Bonneau P, Bonneau D, Reynier P, Audo I, Zeitz C, Sahel JA, Paquis-Flucklinger V, Calvas P, Arveiler B, Kohl S, Wissinger B, Blanchet C, Meunier I, Hamel CP. Ophthalmic Epidemiology 20(1):13-25. (2013) PMID 23350551
  • "Combining gene mapping and phenotype assessment for fast mutation finding in non-consanguineous autosomal recessive retinitis pigmentosa families." Hebrard M, Manes G, Bocquet B, Meunier I, Coustes-Chazalette D, Hérald E, Sénéchal A, Bolland-Augé A, Zelenika D, Hamel CP. European Journal of Human Genetics 19(12):1256-1263. (December, 2011) PMID 21792230
  • "A novel locus (CORD12) for autosomal dominant cone-rod dystrophy on chromosome 2q24.2-2q33.1." Manes G, Hebrard M, Bocquet B, Meunier I, Coustes-Chazalette D, Sénéchal A, Bolland-Augé A, Zelenika D, Hamel CP. BMC Medical Genetics 12(1):54. (2011) PMID 21496248
  • "ScripTree: scripting phylogenetic graphics." Chevenet F, Croce O, Hebrard M, Christen R, Berry V. Bioinformatics 26(8):1125-1126. (2010) PMID 20194627

Presentations (Talks & Posters)

  • "iCLiKVAL network view[5]." Joint Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and European Conference on Computational Biology (ECCB) 2017. Prague, Czech Republic. 2017. (Poster)
  • "The iCLiKVAL 3D Project." Sakura Symposium 2017. Yokohama, Japan. 2017. (Poster)
  • "Visualization Platforms of the Laboratory for Integrated Bioinformatics." IMS Retreat 2017. Yokosuka, Japan. 2017. (Poster)
  • "Visualization Platforms of the Laboratory for Integrated Bioinformatics." RIKEN 2017 Joint Retreat. Hamamatsu, Japan. 2017. (Poster)
  • "iCLiKVAL 3D View." Immersive Approaches to Biological Data Visualization. New York, USA. 2016. (Talk)
  • "Adjuvants Impact on B Cell Repertoires and Potentiate Humoral Recall Responses." Immune Profiling in Health and Disease. Seattle, USA. 2016. (Poster)
  • "MetaTreeMap: a new visualization of metagenomic phylogenic trees." Genome Informatics. Cambridge, UK. 2016. (Poster)
  • "MetaTreeMap: a new visualization of metagenomic phylogenic trees[6]." European Conference on Computational Biology. The Hague, Netherlands. 2016. (Poster)
  • "Visual representation of taxonomic assignment." Genome Informatics. New York, USA. 2015. (Poster)
  • "Metagenomics visualization." Hiram College Visit. Yokohama, Japan. 2015. (Talk)
  • "Investigating the genomic diversity of marine microalgae with bioinformatics." Labex Solutions Numériques Matérielles et Modélisation pour l’Environnement et le Vivant (Labex NUMEV). Montpellier, France. 2013. (Poster)
  • "Développement d'un outil d'aide au diagnostic dédié aux pathologies rétiniennes héréditaires." 6e Assises de Génétiques. Marseille, France. 2013. (Poster)
  • "Transmitted Allele Search Engine (T.A.S.E.)." Journée PLUME biologie[7]. Montpellier, France. 2012. (Talk)